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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108424039Uncharacterized protein; Belongs to the tropomyosin family. (308 aa)    
Predicted Functional Partners:
LOC108425385
Troponin T2e, cardiac.
   
 0.956
LOC108441587
Troponin T type 2b (cardiac).
   
 0.956
LOC108428114
Actin alpha cardiac muscle 1c.
   
 0.939
ENSPNAP00000014177
Troponin T2d, cardiac.
   
 0.934
ENSPNAP00000002092
Troponin T2c, cardiac.
   
 0.915
ACTA1
Actin alpha 1, skeletal muscle.
   
 0.901
LOC108410881
Actin alpha cardiac muscle 1a.
   
 0.901
LOC108430668
Uncharacterized protein.
   
 0.884
LOC108414322
Zgc:86709.
   
 0.857
LOC108433055
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.840
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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