LOC108430977 protein (Pygocentrus nattereri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC108430977

Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor). (785 aa)

Predicted Functional Partners:

stip1

0.941

ptges3

0.939

LOC108433158

0.939

LOC108437096

0.925

ncoa2

0.894

hsp90ab1

0.892

LOC108411468

0.892

LOC108411456

0.892

NR3C1

0.883

ncor1

0.866

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108411456	LOC108411468	ENSPNAP00000032587	ENSPNAP00000032528	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	0.871
LOC108411456	LOC108430977	ENSPNAP00000032587	ENSPNAP00000004140	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).	0.892
LOC108411456	LOC108433158	ENSPNAP00000032587	ENSPNAP00000019025	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	Prostaglandin E synthase 3a (cytosolic).	0.946
LOC108411456	NR3C1	ENSPNAP00000032587	ENSPNAP00000036234	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	Nuclear receptor subfamily 3 group C member 1.	0.892
LOC108411456	hsp90ab1	ENSPNAP00000032587	ENSPNAP00000026718	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.882
LOC108411456	ptges3	ENSPNAP00000032587	ENSPNAP00000004271	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	Prostaglandin E synthase 3b (cytosolic).	0.946
LOC108411456	stip1	ENSPNAP00000032587	ENSPNAP00000033783	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	Stress-induced phosphoprotein 1.	0.989
LOC108411468	LOC108411456	ENSPNAP00000032528	ENSPNAP00000032587	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	0.871
LOC108411468	LOC108430977	ENSPNAP00000032528	ENSPNAP00000004140	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).	0.892
LOC108411468	LOC108433158	ENSPNAP00000032528	ENSPNAP00000019025	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Prostaglandin E synthase 3a (cytosolic).	0.946
LOC108411468	NR3C1	ENSPNAP00000032528	ENSPNAP00000036234	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Nuclear receptor subfamily 3 group C member 1.	0.892
LOC108411468	hsp90ab1	ENSPNAP00000032528	ENSPNAP00000026718	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.871
LOC108411468	ptges3	ENSPNAP00000032528	ENSPNAP00000004271	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Prostaglandin E synthase 3b (cytosolic).	0.946
LOC108411468	stip1	ENSPNAP00000032528	ENSPNAP00000033783	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Stress-induced phosphoprotein 1.	0.989
LOC108430977	LOC108411456	ENSPNAP00000004140	ENSPNAP00000032587	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	0.892
LOC108430977	LOC108411468	ENSPNAP00000004140	ENSPNAP00000032528	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	0.892
LOC108430977	LOC108433158	ENSPNAP00000004140	ENSPNAP00000019025	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).	Prostaglandin E synthase 3a (cytosolic).	0.939
LOC108430977	LOC108437096	ENSPNAP00000004140	ENSPNAP00000003930	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	0.925
LOC108430977	NR3C1	ENSPNAP00000004140	ENSPNAP00000036234	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).	Nuclear receptor subfamily 3 group C member 1.	0.883
LOC108430977	hsp90ab1	ENSPNAP00000004140	ENSPNAP00000026718	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.892