LOC108429273 protein (Pygocentrus nattereri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC108429273

WD_REPEATS_REGION domain-containing protein. (771 aa)

Predicted Functional Partners:

strip1

0.821

strip2

0.813

map2k7

0.783

LOC108414873

0.735

cttnbp2nl

0.735

stk26

0.732

LOC108436518

0.721

LOC108428700

0.721

slmap

0.715

LOC108432589

0.704

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108414873	LOC108428700	ENSPNAP00000006990	ENSPNAP00000009429	CTTNBP2 N-terminal like b.	Protein phosphatase 2, regulatory subunit A, beta a.	0.747
LOC108414873	LOC108429273	ENSPNAP00000006990	ENSPNAP00000004288	CTTNBP2 N-terminal like b.	WD_REPEATS_REGION domain-containing protein.	0.735
LOC108414873	LOC108432589	ENSPNAP00000006990	ENSPNAP00000001566	CTTNBP2 N-terminal like b.	MOB family member 4, phocein.	0.840
LOC108414873	LOC108436518	ENSPNAP00000006990	ENSPNAP00000002075	CTTNBP2 N-terminal like b.	Protein phosphatase 2, regulatory subunit A, beta b.	0.747
LOC108414873	stk26	ENSPNAP00000006990	ENSPNAP00000035746	CTTNBP2 N-terminal like b.	Serine/threonine protein kinase 26.	0.661
LOC108414873	strip1	ENSPNAP00000006990	ENSPNAP00000037047	CTTNBP2 N-terminal like b.	Striatin interacting protein 1.	0.823
LOC108414873	strip2	ENSPNAP00000006990	ENSPNAP00000037657	CTTNBP2 N-terminal like b.	Striatin interacting protein 2.	0.823
LOC108428700	LOC108414873	ENSPNAP00000009429	ENSPNAP00000006990	Protein phosphatase 2, regulatory subunit A, beta a.	CTTNBP2 N-terminal like b.	0.747
LOC108428700	LOC108429273	ENSPNAP00000009429	ENSPNAP00000004288	Protein phosphatase 2, regulatory subunit A, beta a.	WD_REPEATS_REGION domain-containing protein.	0.721
LOC108428700	LOC108432589	ENSPNAP00000009429	ENSPNAP00000001566	Protein phosphatase 2, regulatory subunit A, beta a.	MOB family member 4, phocein.	0.751
LOC108428700	LOC108436518	ENSPNAP00000009429	ENSPNAP00000002075	Protein phosphatase 2, regulatory subunit A, beta a.	Protein phosphatase 2, regulatory subunit A, beta b.	0.870
LOC108428700	cttnbp2nl	ENSPNAP00000009429	ENSPNAP00000025063	Protein phosphatase 2, regulatory subunit A, beta a.	CTTNBP2 N-terminal like a.	0.747
LOC108428700	slmap	ENSPNAP00000009429	ENSPNAP00000021451	Protein phosphatase 2, regulatory subunit A, beta a.	Sarcolemma associated protein a.	0.866
LOC108428700	stk26	ENSPNAP00000009429	ENSPNAP00000035746	Protein phosphatase 2, regulatory subunit A, beta a.	Serine/threonine protein kinase 26.	0.626
LOC108428700	strip1	ENSPNAP00000009429	ENSPNAP00000037047	Protein phosphatase 2, regulatory subunit A, beta a.	Striatin interacting protein 1.	0.873
LOC108428700	strip2	ENSPNAP00000009429	ENSPNAP00000037657	Protein phosphatase 2, regulatory subunit A, beta a.	Striatin interacting protein 2.	0.873
LOC108429273	LOC108414873	ENSPNAP00000004288	ENSPNAP00000006990	WD_REPEATS_REGION domain-containing protein.	CTTNBP2 N-terminal like b.	0.735
LOC108429273	LOC108428700	ENSPNAP00000004288	ENSPNAP00000009429	WD_REPEATS_REGION domain-containing protein.	Protein phosphatase 2, regulatory subunit A, beta a.	0.721
LOC108429273	LOC108432589	ENSPNAP00000004288	ENSPNAP00000001566	WD_REPEATS_REGION domain-containing protein.	MOB family member 4, phocein.	0.704
LOC108429273	LOC108436518	ENSPNAP00000004288	ENSPNAP00000002075	WD_REPEATS_REGION domain-containing protein.	Protein phosphatase 2, regulatory subunit A, beta b.	0.721