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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
samd7Sterile alpha motif domain containing 7. (532 aa)    
Predicted Functional Partners:
LOC108440332
Opsin 1 (cone pigments), short-wave-sensitive 2.
     
 0.674
sdc1
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
  0.614
ENSPNAP00000004191
G protein-coupled receptor 160.
      
 0.610
WDR49
WD repeat domain 49.
   
  0.609
ENSPNAP00000024366
WD40 repeat domain 95.
   
  0.609
ENSPNAP00000013122
SPARC-like 2.
     
 0.574
sparc
Secreted protein, acidic, cysteine-rich (osteonectin).
     
 0.574
LOC108429568
SPARC-like 1.
     
 0.574
LOC108413195
Wolfram syndrome 1a (wolframin).
     
 0.562
LOC108438377
Wolfram syndrome 1b (wolframin).
     
 0.562
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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