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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hfm1Helicase for meiosis 1. (1064 aa)    
Predicted Functional Partners:
prpf8
Pre-mRNA processing factor 8.
   
 0.979
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.964
sec63
SEC63 homolog, protein translocation regulator.
     
 0.953
ascc2
Activating signal cointegrator 1 complex subunit 2.
    
 0.952
ENSPNAP00000013234
Small nuclear ribonucleoprotein polypeptide F.
   
 0.948
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.942
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.941
snrpg
Small nuclear ribonucleoprotein G.
   
  0.935
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 0.915
sart1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.914
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.