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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCNKCyclin K; Belongs to the cyclin family. (526 aa)    
Predicted Functional Partners:
cdk13
Cyclin-dependent kinase 13.
    
 0.982
cdk12
Cyclin-dependent kinase 12.
    
 0.982
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.
   
 0.980
supt5h
Transcription elongation factor SPT5.
    
 0.922
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.922
ENSPNAP00000011272
annotation not available
   
 0.922
ENSPNAP00000029075
Uncharacterized protein.
   
 0.920
supt4h1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.904
ccnh
Cyclin H; Belongs to the cyclin family.
     
 0.892
ddb1
Damage-specific DNA binding protein 1.
    
 
 0.891
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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