tmem41a protein (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tmem41a

Transmembrane protein 41ab. (275 aa)

Predicted Functional Partners:

gldc

0.719

pdhb

0.713

pisd

0.709

LOC108444346

0.673

nadk

0.668

bckdhb

0.660

LOC108433043

0.658

LOC108421035

0.658

dlat

0.618

pdhx

0.573

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108421035	LOC108433043	ENSPNAP00000020203	ENSPNAP00000008101	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.922
LOC108421035	bckdhb	ENSPNAP00000020203	ENSPNAP00000018082	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Branched chain keto acid dehydrogenase E1 subunit beta.	0.788
LOC108421035	dlat	ENSPNAP00000020203	ENSPNAP00000008961	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.834
LOC108421035	gldc	ENSPNAP00000020203	ENSPNAP00000007111	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.996
LOC108421035	pdhb	ENSPNAP00000020203	ENSPNAP00000022530	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.777
LOC108421035	pdhx	ENSPNAP00000020203	ENSPNAP00000022430	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.834
LOC108421035	tmem41a	ENSPNAP00000020203	ENSPNAP00000004817	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Transmembrane protein 41ab.	0.658
LOC108433043	LOC108421035	ENSPNAP00000008101	ENSPNAP00000020203	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.922
LOC108433043	bckdhb	ENSPNAP00000008101	ENSPNAP00000018082	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Branched chain keto acid dehydrogenase E1 subunit beta.	0.788
LOC108433043	dlat	ENSPNAP00000008101	ENSPNAP00000008961	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.834
LOC108433043	gldc	ENSPNAP00000008101	ENSPNAP00000007111	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.996
LOC108433043	pdhb	ENSPNAP00000008101	ENSPNAP00000022530	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.777
LOC108433043	pdhx	ENSPNAP00000008101	ENSPNAP00000022430	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.834
LOC108433043	tmem41a	ENSPNAP00000008101	ENSPNAP00000004817	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Transmembrane protein 41ab.	0.658
LOC108444346	nadk	ENSPNAP00000004215	ENSPNAP00000031688	NAD kinase b.	NAD kinase a.	0.883
LOC108444346	tmem41a	ENSPNAP00000004215	ENSPNAP00000004817	NAD kinase b.	Transmembrane protein 41ab.	0.673
bckdhb	LOC108421035	ENSPNAP00000018082	ENSPNAP00000020203	Branched chain keto acid dehydrogenase E1 subunit beta.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.788
bckdhb	LOC108433043	ENSPNAP00000018082	ENSPNAP00000008101	Branched chain keto acid dehydrogenase E1 subunit beta.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.788
bckdhb	dlat	ENSPNAP00000018082	ENSPNAP00000008961	Branched chain keto acid dehydrogenase E1 subunit beta.	Acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.983
bckdhb	pdhb	ENSPNAP00000018082	ENSPNAP00000022530	Branched chain keto acid dehydrogenase E1 subunit beta.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.706