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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cul4aCullin 4A; Belongs to the cullin family. (738 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
   
 0.993
DCAF1
DDB1 and CUL4 associated factor 1.
   
 0.988
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.981
dtl
Denticleless E3 ubiquitin protein ligase homolog (Drosophila).
    
 0.973
ddb2
Damage-specific DNA binding protein 2.
    
 0.967
ercc8
Excision repair cross-complementation group 8.
    
 0.962
rnf7
Ring finger protein 7.
    
 0.957
cops5
COP9 signalosome subunit 5.
    
 0.953
dda1
DET1 and DDB1 associated 1.
    
 0.949
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
    
 0.940
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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