Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
u2surpU2 snRNP-associated SURP domain containing. (948 aa)    
Predicted Functional Partners:
cherp
Calcium homeostasis endoplasmic reticulum protein.
   
 0.996
sf3a2
Splicing factor 3a, subunit 2.
    
 0.988
rbm17
RNA binding motif protein 17.
   
 0.986
sf3b1
Splicing factor 3b, subunit 1.
   
 0.982
dhx15
DEAH (Asp-Glu-Ala-His) box helicase 15.
   
 0.968
sf3b3
Splicing factor 3b, subunit 3.
   
 0.965
sf3a1
Splicing factor 3a, subunit 1.
   
 0.958
ENSPNAP00000013234
Small nuclear ribonucleoprotein polypeptide F.
   
 0.957
sf3a3
Splicing factor 3a, subunit 3.
   
 0.952
sf3b2
Splicing factor 3b, subunit 2.
   
 0.951
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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