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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPNAP00000005039Calcium channel, voltage-dependent, L type, alpha 1D subunit, b. (95 aa)    
Predicted Functional Partners:
UNC79
Unc-79 homolog, NALCN channel complex subunit.
   
 0.997
wdr35
WD repeat-containing protein 35.
    
 0.803
IFT122
Intraflagellar transport 122.
   
 0.795
wdr19
WD repeat domain 19.
    
 0.791
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
    
 0.788
LOC108432549
Calcium channel, voltage-dependent, alpha 2/delta subunit 1a.
   
 0.775
cacna2d2
Calcium channel, voltage-dependent, alpha 2/delta subunit 2b.
   
 0.775
LOC108433686
Calcium channel, voltage-dependent, alpha 2/delta subunit 2a.
   
 0.775
cacna2d1
Calcium voltage-gated channel auxiliary subunit alpha2delta 1.
   
 0.775
LOC108412846
Voltage-dependent calcium channel gamma-1 subunit; Regulatory subunit of the voltage-gated calcium channel that gives rise to L-type calcium currents in skeletal muscle. Regulates channel inactivation kinetics.
   
 0.753
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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