Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108423852Motor neuron and pancreas homeobox 2a. (286 aa)    
Predicted Functional Partners:
tbx20
T-box transcription factor 20.
    
 
 0.625
ptf1a
Pancreas associated transcription factor 1a.
    
 
 0.590
rfx4
Regulatory factor X, 4.
      
 0.535
LOC108410478
TGF_BETA_2 domain-containing protein.
      
 0.491
ptgs1
Prostaglandin-endoperoxide synthase 1.
      
 0.437
ENSPNAP00000019725
Solute carrier family 6 member 5.
      
 0.436
LOC108412864
LIM homeobox 4.
   
 
 0.435
LHX3
LIM homeobox 3.
   
 
 0.435
rfx6
Regulatory factor X, 6.
      
 0.431
LOC108424991
Tetraspanin.
      
 0.421
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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