Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TCF4Transcription factor 4. (641 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.932
tal1
T-cell acute lymphocytic leukemia 1.
    
 0.903
LOC108414240
Catenin, beta 2.
    
 0.899
LOC108424741
BHLH domain-containing protein.
    
 0.898
myf5
Myogenic factor.
    
 0.862
myod1
Myogenic factor.
    
 0.862
id2
Inhibitor of DNA binding 2a.
    
 
 0.856
myog
Myogenin.
    
 0.839
myf6
Myogenic factor 6.
    
 0.825
id3
Inhibitor of DNA binding 3.
    
 
 0.802
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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