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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csde1Cold shock domain containing E1, RNA-binding. (913 aa)    
Predicted Functional Partners:
ENSPNAP00000007676
EH domain-containing protein.
    
 0.874
ENSPNAP00000007700
Uncharacterized protein.
    
 0.874
ralbp1
RalA binding protein 1.
    
 0.874
LOC108441044
Intersectin 2b.
    
 0.874
plce1
Phospholipase C, epsilon 1.
    
 0.868
afdn
Afadin, adherens junction formation factor a.
    
 0.860
rassf5
Ras association domain family member 5.
    
 0.853
nos1ap
Nitric oxide synthase 1 (neuronal) adaptor protein a.
    
 0.841
LOC108428121
Si:dkey-34e4.1.
    
 0.841
itsn1
Intersectin 1 (SH3 domain protein).
    
 0.829
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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