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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108438677Protein tyrosine phosphatase 4A1. (208 aa)    
Predicted Functional Partners:
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.737
ENSPNAP00000031350
Serine peptidase inhibitor, Kazal type 2, tandem duplicate 5.
   
    0.681
aup1
AUP1 lipid droplet regulating VLDL assembly factor.
    
 
 0.561
cnnm4
Cyclin and CBS domain divalent metal cation transport mediator 4a.
    
 
 0.532
CNNM3
Cyclin and CBS domain divalent metal cation transport mediator 3.
    
 
 0.532
LOC108431740
Cyclin and CBS domain divalent metal cation transport mediator 4b.
    
 
 0.532
cnnm2
Cyclin and CBS domain divalent metal cation transport mediator 2a.
    
 
 0.532
LOC108435981
Cyclin and CBS domain divalent metal cation transport mediator 2b.
    
 
 0.532
CNNM1
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.527
SLC35A4
Solute carrier family 35 member A4.
      
 0.517
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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