ttc5 protein (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ttc5

Tetratricopeptide repeat domain 5. (446 aa)

Predicted Functional Partners:

atm

0.909

aldh18a1

0.906

ak9

0.898

ep300

0.888

gmps

0.888

LOC108413510

0.888

LOC108423915

0.885

asmtl

0.883

eprs1

0.858

polr1b

0.830

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108413510	ep300	ENSPNAP00000031903	ENSPNAP00000013182	E1A binding protein p300 a.	E1A binding protein p300 b.	0.871
LOC108413510	gmps	ENSPNAP00000031903	ENSPNAP00000028501	E1A binding protein p300 a.	Guanine monophosphate synthase.	0.630
LOC108413510	polr1b	ENSPNAP00000031903	ENSPNAP00000027952	E1A binding protein p300 a.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.484
LOC108413510	ttc5	ENSPNAP00000031903	ENSPNAP00000005735	E1A binding protein p300 a.	Tetratricopeptide repeat domain 5.	0.888
LOC108423915	ak9	ENSPNAP00000029043	ENSPNAP00000028381	NME/NM23 family member 8; Belongs to the NDK family.	Adenylate kinase 9.	0.966
LOC108423915	aldh18a1	ENSPNAP00000029043	ENSPNAP00000020932	NME/NM23 family member 8; Belongs to the NDK family.	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	0.799
LOC108423915	asmtl	ENSPNAP00000029043	ENSPNAP00000013701	NME/NM23 family member 8; Belongs to the NDK family.	Acetylserotonin O-methyltransferase-like.	0.870
LOC108423915	eprs1	ENSPNAP00000029043	ENSPNAP00000029067	NME/NM23 family member 8; Belongs to the NDK family.	Glutamyl-prolyl-tRNA synthetase.	0.607
LOC108423915	polr1b	ENSPNAP00000029043	ENSPNAP00000027952	NME/NM23 family member 8; Belongs to the NDK family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.743
LOC108423915	ttc5	ENSPNAP00000029043	ENSPNAP00000005735	NME/NM23 family member 8; Belongs to the NDK family.	Tetratricopeptide repeat domain 5.	0.885
ak9	LOC108423915	ENSPNAP00000028381	ENSPNAP00000029043	Adenylate kinase 9.	NME/NM23 family member 8; Belongs to the NDK family.	0.966
ak9	asmtl	ENSPNAP00000028381	ENSPNAP00000013701	Adenylate kinase 9.	Acetylserotonin O-methyltransferase-like.	0.922
ak9	eprs1	ENSPNAP00000028381	ENSPNAP00000029067	Adenylate kinase 9.	Glutamyl-prolyl-tRNA synthetase.	0.408
ak9	gmps	ENSPNAP00000028381	ENSPNAP00000028501	Adenylate kinase 9.	Guanine monophosphate synthase.	0.617
ak9	ttc5	ENSPNAP00000028381	ENSPNAP00000005735	Adenylate kinase 9.	Tetratricopeptide repeat domain 5.	0.898
aldh18a1	LOC108423915	ENSPNAP00000020932	ENSPNAP00000029043	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	NME/NM23 family member 8; Belongs to the NDK family.	0.799
aldh18a1	asmtl	ENSPNAP00000020932	ENSPNAP00000013701	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Acetylserotonin O-methyltransferase-like.	0.403
aldh18a1	eprs1	ENSPNAP00000020932	ENSPNAP00000029067	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Glutamyl-prolyl-tRNA synthetase.	0.954
aldh18a1	gmps	ENSPNAP00000020932	ENSPNAP00000028501	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Guanine monophosphate synthase.	0.953
aldh18a1	polr1b	ENSPNAP00000020932	ENSPNAP00000027952	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.631