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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108425216MARVEL domain containing 2a. (563 aa)    
Predicted Functional Partners:
LOC108414298
Tight junction protein 1b; Belongs to the MAGUK family.
    
 0.930
LOC108430297
Tight junction protein 1a; Belongs to the MAGUK family.
    
 0.896
marveld2
MARVEL domain containing 2b.
  
  
 
0.883
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.
    
 0.850
eaf2
ELL associated factor 2.
    
 0.837
eaf1
ELL associated factor 1.
    
 0.837
supt4h1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.782
LOC108429538
Tight junction protein 3; Belongs to the MAGUK family.
   
 0.768
polr2h
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.762
polr2j
Polymerase (RNA) II (DNA directed) polypeptide J.
    
  0.762
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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