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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btaf1BTAF1 RNA polymerase II, B-TFIID transcription factor-associated. (1730 aa)    
Predicted Functional Partners:
drap1
DR1-associated protein 1 (negative cofactor 2 alpha).
    
 
 0.960
tbpl2
TATA box binding protein like 2.
    
 
 0.951
tbp
TATA box binding protein.
    
 
 0.951
dr1
Down-regulator of transcription 1.
    
 
 0.935
LOC108425679
CBFD_NFYB_HMF domain-containing protein.
    
 
 0.926
tbpl1
TBP-like 1.
    
 
 0.921
supt3h
SPT3 homolog, SAGA and STAGA complex component.
    
 
 0.784
phf12
PHD finger protein 12a.
   
 
 0.773
taf2
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
  
 0.759
gtf2b
General transcription factor IIB.
    
 
 0.734
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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