Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pmp22Peripheral myelin protein 22b. (149 aa)    
Predicted Functional Partners:
wdr90
WD repeat domain 90.
    
 
 0.785
efhb
EF-hand domain family, member B.
   
   0.720
cfap126
Cilia and flagella associated protein 126.
   
 
 0.696
ENSPNAP00000029308
Uncharacterized protein.
   
   0.694
C9orf135
Chromosome 9 open reading frame 135.
   
   0.688
enkur
Enkurin, TRPC channel interacting protein.
   
 
 0.684
LOC108423915
NME/NM23 family member 8; Belongs to the NDK family.
   
 
 0.675
spag8
Sperm associated antigen 8.
   
   0.673
cfap77
Cilia and flagella associated protein 77.
   
 
 0.667
fam183a
Family with sequence similarity 183 member A.
   
 
 0.664
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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