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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108437051Cone-rod homeobox. (297 aa)    
Predicted Functional Partners:
nr2e3
Nuclear receptor subfamily 2, group E, member 3.
   
 
 0.689
LOC108427498
Neural retina leucine zipper.
    
 
 0.589
nr1d1
Nuclear receptor subfamily 1, group d, member 1.
    
 
 0.577
ENSPNAP00000018507
Mix-type homeobox gene 1.
    
0.522
LOC108424631
Retinoic acid receptor, gamma b.
    
 
 0.501
rarg
Uncharacterized protein.
    
 
 0.501
tnpo3
Transportin 3.
      
 0.487
ENSPNAP00000027020
Neuronal differentiation 1.
   
  
 0.487
nr2e1
Nuclear receptor subfamily 2, group E, member 1.
   
 
 0.439
rgr
Retinal G protein coupled receptor b.
      
 0.410
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.