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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
taglnTransgelin; Belongs to the calponin family. (203 aa)    
Predicted Functional Partners:
wdr90
WD repeat domain 90.
    
 
 0.862
enkur
Enkurin, TRPC channel interacting protein.
   
 
 0.691
WDR1
WD repeat domain 1.
   
 
 0.665
efhb
EF-hand domain family, member B.
    
   0.660
ENSPNAP00000014626
Uncharacterized protein.
    
 
 0.629
LOC108433914
PARK2 co-regulated.
    
 
 0.629
efhc1
EF-hand domain (C-terminal) containing 1.
    
 
 0.627
efhc2
EF-hand domain (C-terminal) containing 2.
    
 
 0.627
cfap20
Cilia and flagella associated protein 20.
    
 
 0.600
cunh3orf67
Zgc:162324.
    
 
 0.600
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.