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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPNAP00000006620VPS9 domain-containing protein. (414 aa)    
Predicted Functional Partners:
LOC108424063
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
0.687
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
    
0.687
LOC108438461
Uncharacterized protein.
    
 0.687
zfand4
Zinc finger, AN1-type domain 4.
     
 0.605
abl2
Tyrosine-protein kinase.
    
 0.602
abl1
Tyrosine-protein kinase.
    
 0.602
LOC108423996
Alsin Rho guanine nucleotide exchange factor ALS2 a.
     
 0.596
als2
Alsin Rho guanine nucleotide exchange factor ALS2 b.
     
 0.596
LOC108431877
CHM Rab escort protein.
     
 0.552
aldh18a1
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
      
 0.521
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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