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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spsb3SplA/ryanodine receptor domain and SOCS box containing 3a. (360 aa)    
Predicted Functional Partners:
LOC108426597
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.835
LOC108435724
Elongin C paralog b; Belongs to the SKP1 family.
    
 0.835
cul5
Cullin 5a; Belongs to the cullin family.
    
 0.805
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.759
rnf7
Ring finger protein 7.
    
 0.673
ELOB
Elongin B.
    
 0.648
LOC108427344
Elongin B.
    
 0.648
ENSPNAP00000012297
PHR domain-containing protein.
    
 
 0.641
ENSPNAP00000012321
RING-type domain-containing protein.
    
 
 0.641
ENSPNAP00000030958
Uncharacterized protein.
    
 
 0.641
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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