LOC108437029 protein (Pygocentrus nattereri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC108437029

Uncharacterized protein. (243 aa)

Predicted Functional Partners:

LOC108411371

0.903

apob

0.903

LOC108444391

0.868

ENSPNAP00000001085

0.865

LOC108424101

0.845

LOC108429949

0.804

cetp

0.801

lcat

0.733

ENSPNAP00000030326

0.725

LOC108444392

0.718

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNAP00000001085	LOC108424101	ENSPNAP00000001085	ENSPNAP00000001440	Vitellogenin domain-containing protein.	Apolipoprotein A-Ib.	0.780
ENSPNAP00000001085	LOC108429949	ENSPNAP00000001085	ENSPNAP00000019562	Vitellogenin domain-containing protein.	Apolipoprotein Eb.	0.908
ENSPNAP00000001085	LOC108437029	ENSPNAP00000001085	ENSPNAP00000006716	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.865
ENSPNAP00000001085	LOC108444391	ENSPNAP00000001085	ENSPNAP00000002244	Vitellogenin domain-containing protein.	Apolipoprotein Ea.	0.957
ENSPNAP00000001085	LOC108444392	ENSPNAP00000001085	ENSPNAP00000002272	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.434
ENSPNAP00000001085	cetp	ENSPNAP00000001085	ENSPNAP00000029920	Vitellogenin domain-containing protein.	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	0.871
ENSPNAP00000001085	lcat	ENSPNAP00000001085	ENSPNAP00000005607	Vitellogenin domain-containing protein.	Lecithin-cholesterol acyltransferase.	0.641
ENSPNAP00000030326	LOC108424101	ENSPNAP00000030326	ENSPNAP00000001440	Uncharacterized protein.	Apolipoprotein A-Ib.	0.671
ENSPNAP00000030326	LOC108429949	ENSPNAP00000030326	ENSPNAP00000019562	Uncharacterized protein.	Apolipoprotein Eb.	0.732
ENSPNAP00000030326	LOC108437029	ENSPNAP00000030326	ENSPNAP00000006716	Uncharacterized protein.	Uncharacterized protein.	0.725
ENSPNAP00000030326	LOC108444391	ENSPNAP00000030326	ENSPNAP00000002244	Uncharacterized protein.	Apolipoprotein Ea.	0.835
ENSPNAP00000030326	cetp	ENSPNAP00000030326	ENSPNAP00000029920	Uncharacterized protein.	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	0.675
LOC108411371	LOC108424101	ENSPNAP00000014924	ENSPNAP00000001440	Apolipoprotein Bb, tandem duplicate 2.	Apolipoprotein A-Ib.	0.842
LOC108411371	LOC108429949	ENSPNAP00000014924	ENSPNAP00000019562	Apolipoprotein Bb, tandem duplicate 2.	Apolipoprotein Eb.	0.921
LOC108411371	LOC108437029	ENSPNAP00000014924	ENSPNAP00000006716	Apolipoprotein Bb, tandem duplicate 2.	Uncharacterized protein.	0.903
LOC108411371	LOC108444391	ENSPNAP00000014924	ENSPNAP00000002244	Apolipoprotein Bb, tandem duplicate 2.	Apolipoprotein Ea.	0.969
LOC108411371	LOC108444392	ENSPNAP00000014924	ENSPNAP00000002272	Apolipoprotein Bb, tandem duplicate 2.	Uncharacterized protein.	0.589
LOC108411371	apob	ENSPNAP00000014924	ENSPNAP00000030984	Apolipoprotein Bb, tandem duplicate 2.	Apolipoprotein Ba.	0.552
LOC108411371	cetp	ENSPNAP00000014924	ENSPNAP00000029920	Apolipoprotein Bb, tandem duplicate 2.	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	0.907
LOC108411371	lcat	ENSPNAP00000014924	ENSPNAP00000005607	Apolipoprotein Bb, tandem duplicate 2.	Lecithin-cholesterol acyltransferase.	0.641