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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clrn3Clarin 3. (228 aa)    
Predicted Functional Partners:
CRK
CRK proto-oncogene, adaptor protein.
    
 0.825
crkl
V-crk avian sarcoma virus CT10 oncogene homolog-like.
    
 0.825
crk
V-crk avian sarcoma virus CT10 oncogene homolog.
    
 0.825
elmo2
Engulfment and cell motility 2.
    
 0.814
LOC108425788
Engulfment and cell motility 1 (ced-12 homolog, C. elegans).
    
 0.814
elmo3
Engulfment and cell motility 3.
    
 0.814
ENSPNAP00000035550
Si:dkey-56f14.7.
    
 0.814
rnf24
Ring finger protein 24.
      
 0.644
ubox5
U-box domain containing 5.
      
 0.615
GHITM
Growth hormone inducible transmembrane protein; Belongs to the BI1 family.
      
 0.609
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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