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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108413025NACHT domain-containing protein. (1052 aa)    
Predicted Functional Partners:
nek7
NIMA-related kinase 7; Belongs to the protein kinase superfamily.
    
  0.552
ENSPNAP00000006046
Uncharacterized protein.
    
  0.545
sugt1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
    
 0.540
hsp90ab1
Heat shock protein 90, alpha (cytosolic), class B member 1.
    
  0.538
LOC108411468
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.
    
  0.538
LOC108411456
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.
    
  0.538
LOC108428543
Caspase 23, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
   
 0.535
brcc3
BRCA1/BRCA2-containing complex, subunit 3.
    
  0.530
LOC108427452
V-rel avian reticuloendotheliosis viral oncogene homolog A.
    
 0.524
LOC108415719
NIMA-related kinase 6.
    
  0.498
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.