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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108441074Histone deacetylase 7b. (803 aa)    
Predicted Functional Partners:
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.922
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.922
MACROH2A1
H2A histone family member Y; Belongs to the histone H2A family.
    
 0.795
LOC108443808
Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.
    
 0.795
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.783
LOC108438537
SIN3 transcription regulator family member Ab.
    
 0.783
sin3b
SIN3 transcription regulator family member B.
    
 0.783
sin3a
SIN3 transcription regulator family member Aa.
    
 0.783
LOC108438657
Retinoblastoma binding protein 4, like.
   
 0.781
wdr73
WD repeat domain 73.
   
 0.781
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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