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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nid1Nidogen 1b. (1254 aa)    
Predicted Functional Partners:
hspg2
Heparan sulfate proteoglycan 2.
   
 0.806
LOC108424184
Malate synthase-like.
  
 
  0.796
LOC108428940
Cytochrome b5 reductase 4.
     
 0.772
agrn
Agrin.
   
 0.737
LAMC2
Laminin subunit gamma 2.
   
 0.632
lamc3
Laminin, gamma 3.
   
 0.632
lamc1
Laminin, gamma 1.
   
 0.632
LOC108412427
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 0.600
cask
Calcium/calmodulin-dependent serine protein kinase a; Belongs to the MAGUK family.
    
 0.600
LOC108431507
Matrix metallopeptidase 19.
     
 0.576
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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