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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlbp1Retinaldehyde binding protein 1a. (312 aa)    
Predicted Functional Partners:
ankfy1
Ankyrin repeat and FYVE domain containing 1.
     
 0.558
LOC108435720
Retinol dehydrogenase 10b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.499
dhrs3
Dehydrogenase/reductase (SDR family) member 3a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.498
LOC108436143
Short chain dehydrogenase/reductase family 16C, member 5b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.498
LOC108426594
Retinol dehydrogenase 10a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.498
LOC108429340
Si:dkey-221h15.4; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.498
LOC108439496
Dehydrogenase/reductase (SDR family) member 3b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.498
LOC108436036
Short chain dehydrogenase/reductase family 16C, member 5a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.498
sec63
SEC63 homolog, protein translocation regulator.
   
 
 0.437
LOC108438930
AP-1 complex subunit gamma.
    
 0.416
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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