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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frg1FSHD region gene 1. (242 aa)    
Predicted Functional Partners:
cwc22
CWC22 spliceosome associated protein homolog.
   
   0.975
prpf8
Pre-mRNA processing factor 8.
    
 
 0.873
prpf19
Pre-mRNA processing factor 19.
    
   0.855
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
   0.846
ENSPNAP00000013234
Small nuclear ribonucleoprotein polypeptide F.
    
 
 0.805
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
   0.800
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 
 0.799
bcas2
BCAS2 pre-mRNA processing factor.
   
 
 0.753
syf2
SYF2 pre-mRNA-splicing factor.
   
   0.748
cir1
Corepressor interacting with RBPJ, 1.
   
 
 0.747
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.