LOC108444262 protein (Pygocentrus nattereri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC108444262

Sorting nexin 11. (320 aa)

Predicted Functional Partners:

vps35

0.947

snx15

0.892

vps26b

0.861

LOC108423787

0.861

vps26a

0.861

rps6kc1

0.853

wls

0.814

vps29

0.805

usp10

0.666

snx24

0.614

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108423787	LOC108444262	ENSPNAP00000013209	ENSPNAP00000007713	Vacuolar protein sorting 26 homolog B, like.	Sorting nexin 11.	0.861
LOC108423787	vps26a	ENSPNAP00000013209	ENSPNAP00000031420	Vacuolar protein sorting 26 homolog B, like.	VPS26, retromer complex component A.	0.966
LOC108423787	vps26b	ENSPNAP00000013209	ENSPNAP00000006637	Vacuolar protein sorting 26 homolog B, like.	VPS26, retromer complex component B.	0.871
LOC108423787	vps29	ENSPNAP00000013209	ENSPNAP00000010389	Vacuolar protein sorting 26 homolog B, like.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.978
LOC108423787	vps35	ENSPNAP00000013209	ENSPNAP00000028453	Vacuolar protein sorting 26 homolog B, like.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.988
LOC108423787	wls	ENSPNAP00000013209	ENSPNAP00000020494	Vacuolar protein sorting 26 homolog B, like.	Wnt ligand secretion mediator.	0.720
LOC108444262	LOC108423787	ENSPNAP00000007713	ENSPNAP00000013209	Sorting nexin 11.	Vacuolar protein sorting 26 homolog B, like.	0.861
LOC108444262	rps6kc1	ENSPNAP00000007713	ENSPNAP00000017728	Sorting nexin 11.	Ribosomal protein S6 kinase polypeptide 1.	0.853
LOC108444262	snx15	ENSPNAP00000007713	ENSPNAP00000014589	Sorting nexin 11.	Sorting nexin 15.	0.892
LOC108444262	snx24	ENSPNAP00000007713	ENSPNAP00000003193	Sorting nexin 11.	Sorting nexin 24.	0.614
LOC108444262	usp10	ENSPNAP00000007713	ENSPNAP00000029083	Sorting nexin 11.	Ubiquitin carboxyl-terminal hydrolase.	0.666
LOC108444262	vps26a	ENSPNAP00000007713	ENSPNAP00000031420	Sorting nexin 11.	VPS26, retromer complex component A.	0.861
LOC108444262	vps26b	ENSPNAP00000007713	ENSPNAP00000006637	Sorting nexin 11.	VPS26, retromer complex component B.	0.861
LOC108444262	vps29	ENSPNAP00000007713	ENSPNAP00000010389	Sorting nexin 11.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.805
LOC108444262	vps35	ENSPNAP00000007713	ENSPNAP00000028453	Sorting nexin 11.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.947
LOC108444262	wls	ENSPNAP00000007713	ENSPNAP00000020494	Sorting nexin 11.	Wnt ligand secretion mediator.	0.814
rps6kc1	LOC108444262	ENSPNAP00000017728	ENSPNAP00000007713	Ribosomal protein S6 kinase polypeptide 1.	Sorting nexin 11.	0.853
rps6kc1	snx15	ENSPNAP00000017728	ENSPNAP00000014589	Ribosomal protein S6 kinase polypeptide 1.	Sorting nexin 15.	0.596
snx15	LOC108444262	ENSPNAP00000014589	ENSPNAP00000007713	Sorting nexin 15.	Sorting nexin 11.	0.892
snx15	rps6kc1	ENSPNAP00000014589	ENSPNAP00000017728	Sorting nexin 15.	Ribosomal protein S6 kinase polypeptide 1.	0.596