STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snx5Sorting nexin; Involved in several stages of intracellular trafficking. (399 aa)    
Predicted Functional Partners:
snx2
Sorting nexin 2.
   
0.954
LOC108432718
Sorting nexin 1a.
   
0.919
snx6
Sorting nexin; Involved in several stages of intracellular trafficking.
  
  
0.912
LOC108434454
Sorting nexin 1b.
   
0.905
ENSPNAP00000035520
Vps5 domain-containing protein.
   
 0.905
snx4
Sorting nexin 4.
   
 0.903
snx8
Sorting nexin 8a.
    
 0.880
snx30
Sorting nexin family member 30.
    
0.821
snx7
Sorting nexin 7.
    
0.821
cmas
Cytidine monophosphate N-acetylneuraminic acid synthetase a.
    
 0.820
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.