STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc14Tetratricopeptide repeat domain 14. (708 aa)    
Predicted Functional Partners:
pnisr
PNN-interacting serine/arginine-rich protein.
   
   0.853
zfc3h1
zf-C3H1 domain-containing protein.
   
   0.743
rnpc3
RNA-binding region (RNP1, RRM) containing 3.
   
   0.715
sf3b1
Splicing factor 3b, subunit 1.
   
  
 0.656
ATG2B
Autophagy related 2B.
   
 
  0.632
atg2a
Autophagy related 2A.
   
 
  0.632
mbtps2
Membrane-bound transcription factor peptidase, site 2.
      
 0.625
ess2
Ess-2 splicing factor homolog.
   
 
 0.615
ift81
Intraflagellar transport 81 homolog.
    
 0.611
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
    
 0.571
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.