STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slf1SMC5-SMC6 complex localization factor 1. (877 aa)    
Predicted Functional Partners:
bard1
BRCA1 associated RING domain 1.
   
0.998
atr
ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family.
    
 0.998
cdc45
CDC45 cell division cycle 45 homolog (S. cerevisiae).
   
 
 0.997
nbn
Nibrin.
    
 0.997
atm
Non-specific serine/threonine protein kinase.
   
 0.996
wrn
WRN RecQ like helicase.
  
 0.996
atrip
ATR interacting protein.
    
 0.995
rad1
RAD1 homolog (S. pombe).
    
 0.995
rad17
RAD17 checkpoint clamp loader component.
  
 0.995
DNA2
DNA replication helicase/nuclease 2.
   
 0.993
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.