STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPNAP00000020350Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (183 aa)    
Predicted Functional Partners:
LOC108425806
Calpain small subunit 1.
 
 
 0.809
ENSPNAP00000018495
Uncharacterized protein.
    
 0.729
capns1
Calpain, small subunit 1 a.
 
 
 0.710
tln1
Talin 1.
    
 0.708
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.575
pdcd6
Programmed cell death 6.
   
 0.500
pef1
Penta-EF-hand domain containing 1.
   
 0.500
LOC108437831
Grancalcin.
   
 0.495
LOC108444548
Sorcin.
   
 0.495
LOC108433629
Talin 2b.
    
 0.493
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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