STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108433697Charged multivesicular body protein 4Ba. (222 aa)    
Predicted Functional Partners:
pdcd6ip
Programmed cell death 6 interacting protein.
    
 0.989
LOC108425263
Protein tyrosine phosphatase, non-receptor type 23, b.
    
 0.984
ptpn23
Protein tyrosine phosphatase, non-receptor type 23, a.
    
 0.984
chmp3
Charged multivesicular body protein 3.
   
 0.982
chmp2a
Charged multivesicular body protein 2A.
    
 0.979
chmp7
Charged multivesicular body protein 7.
    
 0.964
ist1
IST1 factor associated with ESCRT-III.
    
 0.933
LOC108440659
Charged multivesicular body protein 5a.
  
0.932
LOC108436133
Charged multivesicular body protein 5b.
  
0.932
LOC108432238
Charged multivesicular body protein 6a.
    
0.926
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.