STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrnp25Small nuclear ribonucleoprotein 25. (179 aa)    
Predicted Functional Partners:
snrnp48
Small nuclear ribonucleoprotein 48 (U11/U12).
     
 0.856
snrnp70
Small nuclear ribonucleoprotein 70 (U1).
    
 0.837
snrnp35
Small nuclear ribonucleoprotein 35 (U11/U12).
    
 0.837
pdcd7
Programmed cell death 7.
     
 0.760
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
     
 0.754
ENSPNAP00000013234
Small nuclear ribonucleoprotein polypeptide F.
   
 0.740
SRRM3
Serine/arginine repetitive matrix 3.
     
 0.711
ENSPNAP00000013072
Cwf21 domain-containing protein.
     
 0.711
nhp2
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
    0.704
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
     
 0.704
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.