STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPNAP00000027130Histone H2B; Belongs to the histone H2B family. (114 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.823
ENSPNAP00000017949
Uncharacterized protein.
    
 0.823
LOC108442096
Lysine (K)-specific demethylase 6B, b.
    
 0.787
kdm6a
Lysine (K)-specific demethylase 6A.
    
 0.787
LOC108436446
Lysine (K)-specific demethylase 6A, like.
    
 0.787
kdm6b
Lysine (K)-specific demethylase 6B, a.
    
 0.787
ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component.
    
 0.691
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
    
 0.674
rps27a
Ribosomal protein S27a.
    
 0.659
paf1
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.658
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.