STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108417224Transcription elongation regulator 1a (CA150). (1013 aa)    
Predicted Functional Partners:
mfap1
Microfibril associated protein 1.
   
 0.967
prpf38a
Pre-mRNA processing factor 38A.
   
 0.957
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.945
zmat2
Zinc finger, matrin-type 2.
    
  0.945
snw1
SNW domain containing 1.
   
 0.899
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
  0.898
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.893
prpf19
Pre-mRNA processing factor 19.
    
 0.890
LOC108413879
CWC15 spliceosome associated protein homolog.
   
  0.890
ccdc12
Coiled-coil domain containing 12.
    
  0.887
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.