STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSE1Pre-mRNA-splicing factor RSE1. (1187 aa)    
Predicted Functional Partners:
SF3B4
Splicing factor 3B subunit 4.
   
 0.999
DNF11_0950
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.999
SF3B2
Splicing factor 3B subunit 2.
   
 0.999
prp10
U2 snRNP component prp10.
   
 0.999
SNRNP200
U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 
 0.996
Prpf8
Pre-mRNA-processing-splicing factor 8.
   
 
 0.995
DNF11_2887
Pre-mRNA branch site p14-like protein.
    
 0.995
sap114
Pre-mRNA-splicing factor sap114.
   
 0.994
sap61
Pre-mRNA-splicing factor sap61.
   
 0.991
LEA1
U2 small nuclear ribonucleoprotein A.
    
 0.991
Your Current Organism:
Malassezia restricta
NCBI taxonomy Id: 425264
Other names: M. restricta CBS 7877, Malassezia restricta CBS 7877
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.