STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGI54360.12,5-diketo-D-gluconic acid reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)    
Predicted Functional Partners:
KGI54359.1
Flavodoxin; An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.823
KGI54361.1
MdaB protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.481
KGI53923.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.465
KGI54357.1
Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.446
KGI53734.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.446
KGI53906.1
Virulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.425
KGI54358.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.403
Your Current Organism:
Helicobacter japonicus
NCBI taxonomy Id: 425400
Other names: ATCC TSD-46, H. japonicus, Helicobacter japonicum, Helicobacter sp. MIT 01-6451, LMG 28612, LMG:28612, strain MIT 01-6451
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.