Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KGI54513.1Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome c-552 family. (616 aa)    
Predicted Functional Partners:
nrfH
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
napA
Formate dehydrogenase; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
  
  
 0.928
KGI53935.1
Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.902
KGI54876.1
Nitrate reductase; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
 
 
 0.901
KGI54776.1
Heme-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.872
glnA
Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.868
KGI54763.1
2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.850
KGI54929.1
Carbon-nitrogen hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.801
KGI54845.1
Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.615
napH
Quinol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.580
Your Current Organism:
Helicobacter japonicus
NCBI taxonomy Id: 425400
Other names: ATCC TSD-46, H. japonicus, Helicobacter japonicum, Helicobacter sp. MIT 01-6451, LMG 28612, LMG:28612, strain MIT 01-6451
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