Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KGI54723.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)    
Predicted Functional Partners:
KGI54724.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.810
KGI54722.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.808
KGI54721.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.757
KGI54725.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.683
KGI54720.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.495
KGI54718.1
Cb-type cytochrome C oxidase subunit IV; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.481
KGI54719.1
Cytochrome Cbb3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
       0.481
ccoO
Peptidase S13; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.463
ccoN
Cbb3-type cytochrome c oxidase subunit I; CcoN; FixN; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.
       0.437
Your Current Organism:
Helicobacter japonicus
NCBI taxonomy Id: 425400
Other names: ATCC TSD-46, H. japonicus, Helicobacter japonicum, Helicobacter sp. MIT 01-6451, LMG 28612, LMG:28612, strain MIT 01-6451
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