STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGI53991.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)    
Predicted Functional Partners:
KGI53990.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.818
KGI53992.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.818
KGI53988.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.817
rsmH
16S rRNA methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
       0.817
KGI53993.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.653
miaB
(dimethylallyl)adenosine tRNA methylthiotransferase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.653
KGI53780.1
General secretion pathway protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.585
KGI53241.1
General secretion pathway protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.585
KGI53779.1
Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.544
KGI53242.1
Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.544
Your Current Organism:
Helicobacter japonicus
NCBI taxonomy Id: 425400
Other names: ATCC TSD-46, H. japonicus, Helicobacter japonicum, Helicobacter sp. MIT 01-6451, LMG 28612, LMG:28612, strain MIT 01-6451
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.