Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cybHNi/Fe hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)    
Predicted Functional Partners:
KGI53313.1
Ni/Fe hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
KGI53314.1
Hydrogenase 2 large subunit; Involved in hydrogen uptake; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.997
hybD
Protein hydD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.981
KGI54631.1
Ni/Fe hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.959
KGI53317.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.824
KGI53318.1
Cystathionine gamma-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.670
KGI53319.1
Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.659
KGI53320.1
Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.645
KGI53312.1
Type III effector; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.442
KGI53729.1
Motility accessory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.438
Your Current Organism:
Helicobacter japonicus
NCBI taxonomy Id: 425400
Other names: ATCC TSD-46, H. japonicus, Helicobacter japonicum, Helicobacter sp. MIT 01-6451, LMG 28612, LMG:28612, strain MIT 01-6451
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