Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KGI53326.1Cytolethal distending toxin subunit CdtB; Cdt from Campylobacter forms the A subunit (CdtB) that is delivered into host cells by the heterologous B subnit (CdtA/C); in Salmonella, CdtB alone is encoded; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)    
Predicted Functional Partners:
KGI53327.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.890
KGI53905.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.843
KGI54894.1
2-acyl-glycerophospho-ethanolamine acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.720
KGI54293.1
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.648
KGI54673.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.648
KGI53560.1
Phospholipase; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
     
 0.612
KGI54324.1
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.510
KGI53707.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.510
KGI53340.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.510
KGI54530.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.490
Your Current Organism:
Helicobacter japonicus
NCBI taxonomy Id: 425400
Other names: ATCC TSD-46, H. japonicus, Helicobacter japonicum, Helicobacter sp. MIT 01-6451, LMG 28612, LMG:28612, strain MIT 01-6451
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