STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGI53326.1Cytolethal distending toxin subunit CdtB; Cdt from Campylobacter forms the A subunit (CdtB) that is delivered into host cells by the heterologous B subnit (CdtA/C); in Salmonella, CdtB alone is encoded; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)    
Predicted Functional Partners:
KGI53905.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.922
KGI53327.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.909
KGI54293.1
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.878
KGI54673.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.878
KGI53328.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.488
KGI54324.1
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.441
KGI53340.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.441
KGI54530.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.412
KGI54410.1
Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.404
KGI54414.1
Nuclease NucT; Membrane-associated cation-independent thermostable nuclease; preferentially cleaves ss-DNA; involved in DNA transformation; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.404
Your Current Organism:
Helicobacter japonicus
NCBI taxonomy Id: 425400
Other names: ATCC TSD-46, H. japonicus, Helicobacter japonicum, Helicobacter sp. MIT 01-6451, LMG 28612, LMG:28612, strain MIT 01-6451
Server load: high (82%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.