STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGI53361.15,10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)    
Predicted Functional Partners:
KGI53362.1
alpha-L-glutamate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.888
KGI53363.1
Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.853
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
  0.777
KGI54426.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.623
KGI53364.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.585
KGI53365.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.577
KGI53366.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.577
KGI53367.1
Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.577
KGI53360.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.407
Your Current Organism:
Helicobacter japonicus
NCBI taxonomy Id: 425400
Other names: ATCC TSD-46, H. japonicus, Helicobacter japonicum, Helicobacter sp. MIT 01-6451, LMG 28612, LMG:28612, strain MIT 01-6451
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