STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGI53226.1ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)    
Predicted Functional Partners:
KGI53227.1
Sulfate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
KGI53228.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
KGI53794.1
Sulfate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.994
KGI53793.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.989
KGI53229.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.780
bamA
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.477
KGI54411.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.463
KGI53854.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.446
KGI53225.1
DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.434
Your Current Organism:
Helicobacter japonicus
NCBI taxonomy Id: 425400
Other names: ATCC TSD-46, H. japonicus, Helicobacter japonicum, Helicobacter sp. MIT 01-6451, LMG 28612, LMG:28612, strain MIT 01-6451
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.