STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH97954.1MJ0042 family finger-like domain-containing protein. (425 aa)    
Predicted Functional Partners:
SFI81776.1
Hypothetical protein.
  
     0.772
SFI36536.1
Hypothetical protein.
  
     0.756
SFI02748.1
Protein TonB.
  
     0.754
SFI02555.1
Chemosensory pili system protein ChpC.
  
     0.704
SFI02597.1
Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator).
  
     0.696
SFI08157.1
HD-like signal output (HDOD) domain, no enzymatic activity.
  
     0.688
SFI72972.1
Pilus assembly protein FimV.
  
     0.682
SFI17963.1
Hypothetical protein.
  
    0.652
prmA
[LSU ribosomal protein L11P]-lysine N-methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
       0.638
SFJ20640.1
Hypothetical protein.
  
     0.614
Your Current Organism:
Pseudomonas guineae
NCBI taxonomy Id: 425504
Other names: CECT 7231, LMG 24016, LMG:24016, P. guineae, Pseudomonas guineae Bozal et al. 2007, strain M8
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