STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI40979.1Integrase; Belongs to the 'phage' integrase family. (435 aa)    
Predicted Functional Partners:
SFI40804.1
Integrase; Belongs to the 'phage' integrase family.
 
   
 0.817
SFI40863.1
Putative DNA primase/helicase.
 
     0.770
SFH90984.1
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
 
 0.745
SFI40950.1
Hypothetical protein.
       0.642
SFI40834.1
Putative DNA primase/helicase.
 
     0.627
SFH74768.1
Putative DNA primase/helicase.
 
     0.606
SFJ07751.1
Putative DNA primase/helicase.
 
     0.605
fadB
Short chain enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
   
 
  0.500
SFI63187.1
Short chain enoyl-CoA hydratase.
   
 
  0.500
SFI40922.1
Transcriptional regulator, AlpA family.
     
 0.472
Your Current Organism:
Pseudomonas guineae
NCBI taxonomy Id: 425504
Other names: CECT 7231, LMG 24016, LMG:24016, P. guineae, Pseudomonas guineae Bozal et al. 2007, strain M8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.