STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ27405.1Transcriptional regulator, AraC family. (250 aa)    
Predicted Functional Partners:
SFJ27367.1
Plastocyanin.
     0.867
SFI33701.1
Membrane fusion protein, adhesin transport system.
 
     0.729
SFJ27341.1
Diguanylate cyclase/phosphodiesterase.
      0.719
SFJ28650.1
Transcriptional regulator, AraC family.
 
   0.707
SFI01426.1
Glutamate synthase (NADPH) large subunit.
    
  0.672
ribB
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.655
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.648
SFI72567.1
General secretion pathway protein C.
  
     0.616
SFI88521.1
Phospholipid transport system substrate-binding protein.
  
     0.578
SFI06455.1
PAS domain S-box-containing protein.
 
 
 0.540
Your Current Organism:
Pseudomonas guineae
NCBI taxonomy Id: 425504
Other names: CECT 7231, LMG 24016, LMG:24016, P. guineae, Pseudomonas guineae Bozal et al. 2007, strain M8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.